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1248 lines
48 KiB
HTML
1248 lines
48 KiB
HTML
POKI_PUT_TOC_HERE
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<h1>Command overview</h1>
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<p>
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Whereas the Unix toolkit is made of the separate executables <tt>cat</tt>, <tt>tail</tt>, <tt>cut</tt>,
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<tt>sort</tt>, etc., Miller has subcommands, invoked as follows:
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POKI_INCLUDE_ESCAPED(data/subcommand-example.txt)HERE
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<p/>These falls into categories as follows:
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<table border=1>
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<tr class="mlrbg">
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<th>Commands </th>
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<th>Description</th>
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</tr>
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<tr>
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<td>
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<a href="#cat"><tt>cat</tt></a>,
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<a href="#cut"><tt>cut</tt></a>,
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<a href="#head"><tt>head</tt></a>,
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<a href="#sort"><tt>sort</tt></a>,
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<a href="#tac"><tt>tac</tt></a>,
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<a href="#tail"><tt>tail</tt></a>,
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<a href="#top"><tt>top</tt></a>,
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<a href="#uniq"><tt>uniq</tt></a>
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</td>
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<td> Analogs of their Unix-toolkit namesakes, discussed below as well as in
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POKI_PUT_LINK_FOR_PAGE(feature-comparison.html)HERE </td>
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</tr>
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<tr>
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<td>
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<a href="#filter"><tt>filter</tt></a>,
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<a href="#put"><tt>put</tt></a>,
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<a href="#step"><tt>step</tt></a>
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</td>
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<td> <tt>awk</tt>-like functionality </td>
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</tr>
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<tr>
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<td>
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<a href="#histogram"><tt>histogram</tt></a>,
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<a href="#stats1"><tt>stats1</tt></a>,
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<a href="#stats2"><tt>stats2</tt></a>
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</td>
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<td> Statistically oriented </td>
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</tr>
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<tr>
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<td>
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<a href="#group-by"><tt>group-by</tt></a>,
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<a href="#group-like"><tt>group-like</tt></a>,
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<a href="#having-fields"><tt>having-fields</tt></a>
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</td>
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<td> Particularly oriented toward POKI_PUT_LINK_FOR_PAGE(record-heterogeneity.html)HERE, although
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all Miller commands can handle heterogeneous records
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</tr>
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<tr>
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<td>
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<a href="#count-distinct"><tt>count-distinct</tt></a>,
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<a href="#label"><tt>label</tt></a>,
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<a href="#regularize"><tt>rename</tt></a>,
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<a href="#rename"><tt>rename</tt></a>,
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<a href="#reorder"><tt>reorder</tt></a>
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</td>
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<td> These draw from other sources (see also POKI_PUT_LINK_FOR_PAGE(originality.html)HERE):
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<a href="#count-distinct"><tt>count-distinct</tt></a> is SQL-ish, and
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<a href="#rename"><tt>rename</tt></a> can be done by <tt>sed</tt> (which does it faster:
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see POKI_PUT_LINK_FOR_PAGE(performance.html)HERE).
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</td>
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</tr>
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</table>
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<h1>On-line help</h1>
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<p/>Examples:<p/>
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POKI_RUN_COMMAND{{mlr --help}}HERE
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POKI_RUN_COMMAND{{mlr sort --help}}HERE
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<!-- ================================================================ -->
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<h1>Data types</h1>
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<p/> Miller’s input and output are all string-oriented: there is (as of
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August 2015 anyway) no support for binary record packing. In this sense,
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everything is a string in and out of Miller. During processing, field names
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are always strings, even if they have names like "3"; field values are usually
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strings. Field values’ ability to be interpreted as a non-string type
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only has meaning when comparison or function operations are done on them. And
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it is an error condition if Miller encounters non-numeric (or otherwise
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mistyped) data in a field in which it has been asked to do numeric (or
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otherwise type-specific) operations.
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<p/> Field values are treated as numeric for the following:
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<ul>
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<li/> Numeric sort: <tt>mlr sort -n</tt>, <tt>mlr sort -nr</tt>.
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<li/> Statistics: <tt>mlr histogram</tt>, <tt>mlr stats1</tt>, <tt>mlr stats2</tt>.
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<li/> Cross-record arithmetic: <tt>mlr step</tt>.
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</ul>
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<p/>For <tt>mlr put</tt> and <tt>mlr filter</tt>:
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<ul>
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<li/> Miller’s types for function processing are <b>null</b> (empty
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string), <b>error</b>, <b>string</b>, <b>float</b> (double-precision),
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<b>int</b> (64-bit signed), and <b>boolean</b>.
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<li/> On input, string values representable as numbers, e.g. "3" or "3.1", are
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treated as int or float, respectively. If a record has <tt>x=1,y=2</tt> then
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<tt>mlr put '$z=$x+$y'</tt> will produce <tt>x=1,y=2,z=3</tt>, and <tt>mlr put
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'$z=$x.$y'</tt> gives an error. To coerce back to string for processing, use
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the <tt>string</tt> function: <tt>mlr put '$z=string($x).string($y)'</tt> will
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produce <tt>x=1,y=2,z=12</tt>.
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<li/> On input, string values representable as boolean (e.g. <tt>"true"</tt>,
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<tt>"false"</tt>) are <i>not</i> automatically treated as boolean. (This is
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because <tt>"true"</tt> and <tt>"false"</tt> are ordinary words, and auto
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string-to-boolean on a column consisting of words would result in some strings
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mixed with some booleans.) Use the <tt>boolean</tt> function to coerce: e.g.
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giving the record <tt>x=1,y=2,w=false</tt> to <tt>mlr put '$z=($x<$y) ||
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boolean($w)'</tt>.
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<li/> Functions take types as described in <tt>mlr --help-all-functions</tt>:
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for example, <tt>log10</tt> takes float input and produces float output,
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<tt>gmt2sec</tt> maps string to int, and <tt>sec2gmt</tt> maps int to string.
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<li/> All math functions described in <tt>mlr --help-all-functions</tt> take
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integer as well as float input.
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</ul>
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<!-- ================================================================ -->
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<h1>Null data</h1>
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<p/> One of Miller’s key features is its support for <b>heterogeneous</b> data.
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Accordingly, if you try to sort on field <tt>hostname</tt> when not all records in the data
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stream <i>have</i> a field named <tt>hostname</tt>, it is not an error (although you could
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pre-filter the data stream using <tt>mlr having-fields --at-least hostname then sort ...</tt>).
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Rather, records lacking one or more sort keys are simply output contiguously by <tt>mlr sort</tt>.
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<p/> Field values may also be null by being
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specified with present key but empty value: e.g. sending <tt>x=,y=2</tt> to <tt>mlr put '$z=$x+$y'</tt>.
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<p/>
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Rules for null-handling:
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<ul>
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<li> Records with one or more null sort-field values sort after records with all sort-field values present:
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POKI_RUN_COMMAND{{mlr --opprint cat data/sort-null.dat}}HERE
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POKI_RUN_COMMAND{{mlr --opprint sort -n a data/sort-null.dat}}HERE
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POKI_RUN_COMMAND{{mlr --opprint sort -nr a data/sort-null.dat}}HERE
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<li> Functions which have one or more null arguments produce null output: e.g.
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POKI_RUN_COMMAND{{echo 'x=2,y=3' | mlr put '$a=$x+$y'}}HERE
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POKI_RUN_COMMAND{{echo 'x=,y=3' | mlr put '$a=$x+$y'}}HERE
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POKI_RUN_COMMAND{{echo 'x=,y=3' | mlr put '$a=log($x);$b=log($y)'}}HERE
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<li> The <tt>min</tt> and <tt>max</tt> functions are special: if one argument is non-null, it wins:
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POKI_RUN_COMMAND{{echo 'x=,y=3' | mlr put '$a=min($x,$y);$b=max($x,$y)'}}HERE
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</ul>
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<!-- ================================================================ -->
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<h1>I/O options</h1>
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<!-- ================================================================ -->
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<h2>Formats</h2>
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<p/> Options:
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<pre>
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--dkvp --idkvp --odkvp
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--nidx --inidx --onidx
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--csv --icsv --ocsv
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--csvlite --icsvlite --ocsvlite
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--pprint --ipprint --ppprint --right
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--xtab --ixtab --oxtab
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--json --ijson --ojson
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</pre>
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<p/> These are as discussed in POKI_PUT_LINK_FOR_PAGE(file-formats.html)HERE, with the exception of <tt>--right</tt>
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which makes pretty-printed output right-aligned:
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<table><tr><td>
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POKI_RUN_COMMAND{{mlr --opprint cat data/small}}HERE
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</td><td>
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POKI_RUN_COMMAND{{mlr --opprint --right cat data/small}}HERE
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</td></tr></table>
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<p/>Additional notes:
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<ul>
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<li/> Use <tt>--csv</tt>, <tt>--pprint</tt>, etc. when the input and output formats are the same.
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<li/> Use <tt>--icsv --opprint</tt>, etc. when you want format conversion as part of what Miller does to your data.
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<li/> DKVP (key-value-pair) format is the default for input and output. So,
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<tt>--oxtab</tt> is the same as <tt>--idkvp --oxtab</tt>.
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</ul>
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<!-- ================================================================ -->
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<h2>Compression</h2>
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<p/> Options:
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<pre>
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--prepipe {command}
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</pre>
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<p/>The prepipe command is anything which reads from standard input and produces data acceptable to
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Miller. Nominally this allows you to use whichever decompression utilities you have installed on your
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system, on a per-file basis. If the command has flags, quote them: e.g. <tt>mlr --prepipe 'zcat -cf'</tt>. Examples:
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<p/>
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<div class="pokipanel">
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<pre>
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# These two produce the same output:
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$ gunzip < myfile1.csv.gz | mlr cut -f hostname,uptime
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$ mlr --prepipe gunzip cut -f hostname,uptime myfile1.csv.gz
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# With multiple input files you need --prepipe:
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$ mlr --prepipe gunzip cut -f hostname,uptime myfile1.csv.gz myfile2.csv.gz
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$ mlr --prepipe gunzip --idkvp --oxtab cut -f hostname,uptime myfile1.dat.gz myfile2.dat.gz
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# Similar to the above, but with compressed output as well as input:
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$ gunzip < myfile1.csv.gz | mlr cut -f hostname,uptime | gzip > outfile.csv.gz
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$ mlr --prepipe gunzip cut -f hostname,uptime myfile1.csv.gz | gzip > outfile.csv.gz
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$ mlr --prepipe gunzip cut -f hostname,uptime myfile1.csv.gz myfile2.csv.gz | gzip > outfile.csv.gz
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# Similar to the above, but with different compression tools for input and output:
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$ gunzip < myfile1.csv.gz | mlr cut -f hostname,uptime | xz -z > outfile.csv.xz
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$ xz -cd < myfile1.csv.xz | mlr cut -f hostname,uptime | gzip > outfile.csv.xz
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$ mlr --prepipe 'xz -cd' cut -f hostname,uptime myfile1.csv.xz myfile2.csv.xz | xz -z > outfile.csv.xz
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... etc.
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</pre>
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</div>
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<!-- ================================================================ -->
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<h2>Record/field/pair separators</h2>
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<p/> Miller has record separators <tt>IRS</tt> and <tt>ORS</tt>, field
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separators <tt>IFS</tt> and <tt>OFS</tt>, and pair separators <tt>IPS</tt> and
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<tt>OPS</tt>. For example, in the DKVP line <tt>a=1,b=2,c=3</tt>, the record
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separator is newline, field separator is comma, and pair separator is the
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equals sign. These are the default values.
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<p/> Options:
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<pre>
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--rs --irs --ors
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--fs --ifs --ofs --repifs
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--ps --ips --ops
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</pre>
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<ul>
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<li/> You can change a separator from input to output via e.g. <tt>--ifs =
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--ofs :</tt>. Or, you can specify that the same separator is to be used for
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input and output via e.g. <tt>--fs :</tt>.
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<li/> The pair separator is only relevant to DKVP format.
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<li/> Pretty-print and xtab formats ignore the separator arguments altogether.
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<li/> The <tt>--repifs</tt> means that multiple successive occurrences of the
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field separator count as one. For example, in CSV data we often signify nulls
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by empty strings, e.g. <tt>2,9,,,,,6,5,4</tt>. On the other hand, if the field
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separator is a space, it might be more natural to parse <tt>2 4 5</tt> the
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same as <tt>2 4 5</tt>: <tt>--repifs --ifs ' '</tt> lets this happen. In fact,
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the <tt>--ipprint</tt> option above is internally implemented in terms of
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<tt>--repifs</tt>.
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<li/> Just write out the desired separator, e.g. <tt>--ofs '|'</tt>. But you
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may use the symbolic names <tt>newline</tt>, <tt>space</tt>, <tt>tab</tt>,
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<tt>pipe</tt>, or <tt>semicolon</tt> if you like.
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</ul>
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<!-- ================================================================ -->
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<h2>Number formatting</h2>
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<p/> The command-line option <tt>--ofmt {format string}</tt> is the global
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number format for commands which generate numeric output, e.g.
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<tt>stats1</tt>, <tt>stats2</tt>, <tt>histogram</tt>, and <tt>step</tt>, as
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well as <tt>mlr put</tt>. Examples:
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POKI_CARDIFY(--ofmt %.9le --ofmt %.6lf --ofmt %.0lf)HERE
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<p/> These are just C <tt>printf</tt> formats applied to double-precision
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numbers. Please don’t use <tt>%s</tt> or <tt>%d</tt>. Additionally, if
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you use leading width (e.g. <tt>%18.12lf</tt>) then the output will contain
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embedded whitespace, which may not be what you want if you pipe the output to
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something else, particularly CSV. I use Miller’s pretty-print format
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(<tt>mlr --opprint</tt>) to column-align numerical data.
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<p/> To apply formatting to a single field, overriding the global
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<tt>ofmt</tt>, use <tt>fmtnum</tt> function within <tt>mlr put</tt>. For example:
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POKI_RUN_COMMAND{{echo 'x=3.1,y=4.3' | mlr put '$z=fmtnum($x*$y,"%08lf")'}}HERE
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POKI_RUN_COMMAND{{echo 'x=0xffff,y=0xff' | mlr put '$z=fmtnum(int($x*$y),"%08llx")'}}HERE
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<p/>Input conversion from hexadecimal is done automatically on fields handled
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by <tt>mlr put</tt> and <tt>mlr filter</tt> as long as the field value begins
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with "0x". To apply output conversion to hexadecimal on a single column, you
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may use <tt>fmtnum</tt>, or the keystroke-saving <tt>hexfmt</tt> function.
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Example:
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POKI_RUN_COMMAND{{echo 'x=0xffff,y=0xff' | mlr put '$z=hexfmt($x*$y)'}}HERE
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<!-- ================================================================ -->
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<h1>Data transformations</h1>
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<!-- ================================================================ -->
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<h2>bar</h2>
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<p/> Cheesy bar-charting.
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POKI_RUN_COMMAND{{mlr bar -h}}HERE
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POKI_RUN_COMMAND{{mlr --opprint cat data/small}}HERE
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POKI_RUN_COMMAND{{mlr --opprint bar --lo 0 --hi 1 -f x,y data/small}}HERE
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POKI_RUN_COMMAND{{mlr --opprint bar --lo 0.4 --hi 0.6 -f x,y data/small}}HERE
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POKI_RUN_COMMAND{{mlr --opprint bar --auto -f x,y data/small}}HERE
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<!-- ================================================================ -->
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<h2>bootstrap</h2>
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POKI_RUN_COMMAND{{mlr bootstrap --help}}HERE
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<p/> The canonical use for bootstrap sampling is to put error bars on statistical quantities, such as mean. For example:
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<p/>
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<div class="pokipanel">
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<pre>
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$ mlr --opprint stats1 -a mean,count -f u -g color data/colored-shapes.dkvp
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color u_mean u_count
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yellow 0.497129 1413
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red 0.492560 4641
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purple 0.494005 1142
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green 0.504861 1109
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blue 0.517717 1470
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orange 0.490532 303
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$ mlr --opprint bootstrap then stats1 -a mean,count -f u -g color data/colored-shapes.dkvp
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color u_mean u_count
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yellow 0.500651 1380
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purple 0.501556 1111
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green 0.503272 1068
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red 0.493895 4702
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blue 0.512529 1496
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orange 0.521030 321
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$ mlr --opprint bootstrap then stats1 -a mean,count -f u -g color data/colored-shapes.dkvp
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color u_mean u_count
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yellow 0.498046 1485
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blue 0.513576 1417
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red 0.492870 4595
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orange 0.507697 307
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green 0.496803 1075
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purple 0.486337 1199
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$ mlr --opprint bootstrap then stats1 -a mean,count -f u -g color data/colored-shapes.dkvp
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color u_mean u_count
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blue 0.522921 1447
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red 0.490717 4617
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yellow 0.496450 1419
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purple 0.496523 1192
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green 0.507569 1111
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orange 0.468014 292
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</pre>
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</div>
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<p/>
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<!-- ================================================================ -->
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<h2>cat</h2>
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<p/> Most useful for format conversions (see
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POKI_PUT_LINK_FOR_PAGE(file-formats.html)HERE), and concatenating multiple
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same-schema CSV files to have the same header:
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POKI_RUN_COMMAND{{mlr cat -h}}HERE
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<table><tr><td>
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POKI_RUN_COMMAND{{cat a.csv}}HERE
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</td> <td>
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POKI_RUN_COMMAND{{cat b.csv}}HERE
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</td> <td>
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POKI_RUN_COMMAND{{mlr --csv cat a.csv b.csv}}HERE
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</td></tr></table>
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<table><tr><td>
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</td> <td>
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POKI_RUN_COMMAND{{mlr --icsv --oxtab cat a.csv b.csv}}HERE
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</td> <td>
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POKI_RUN_COMMAND{{mlr --csv cat -n a.csv b.csv}}HERE
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</td></tr></table>
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<!-- ================================================================ -->
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<h2>check</h2>
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POKI_RUN_COMMAND{{mlr check --help}}HERE
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<!-- ================================================================ -->
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<h2>decimate</h2>
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POKI_RUN_COMMAND{{mlr decimate --help}}HERE
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<!-- ================================================================ -->
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<h2>count-distinct</h2>
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POKI_RUN_COMMAND{{mlr count-distinct --help}}HERE
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POKI_RUN_COMMAND{{mlr count-distinct -f a,b then sort -nr count data/medium}}HERE
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POKI_RUN_COMMAND{{mlr count-distinct -n -f a,b data/medium}}HERE
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<!-- ================================================================ -->
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<h2>cut</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr cut --help}}HERE
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint cat data/small}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint cut -f y,x,i data/small}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{echo 'a=1,b=2,c=3' | mlr cut -f b,c,a}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{echo 'a=1,b=2,c=3' | mlr cut -o -f b,c,a}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>
|
|
<!-- ================================================================ -->
|
|
<h2>filter</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr filter --help}}HERE
|
|
|
|
<h3>Field names for filter</h3>
|
|
|
|
<p/>Field names must be specified using a <tt>$</tt> in <tt>filter</tt> and <a
|
|
href="#put"><tt>put</tt></a> expressions, even though they don’t appear
|
|
in the data stream. For integer-indexed data, this looks like
|
|
<tt>awk</tt>’s <tt>$1,$2,$3</tt>. Likewise, enclose string literals in
|
|
double quotes in <tt>filter</tt> expressions even though they don’t
|
|
appear in file data. In particular, <tt>mlr filter '$x=="abc"'</tt> passes
|
|
through the record <tt>x=abc</tt>. If field names have special characters such
|
|
as <tt>.</tt> then you can use braces, e.g. <tt>'${field.name}'</tt>.
|
|
|
|
<h3>Built-in variables for filter</h3>
|
|
|
|
<p/>The <tt>filter</tt> command supports the same built-in variables as for <a
|
|
href="#put"><tt>put</tt></a>, all <tt>awk</tt>-inspired: <tt>NF</tt>,
|
|
<tt>NR</tt>, <tt>FNR</tt>, <tt>FILENUM</tt>, and <tt>FILENAME</tt>, as well as
|
|
the mathematical constants <tt>PI</tt> and <tt>E</tt>. This selects the 2nd
|
|
record from each matching file:
|
|
|
|
POKI_RUN_COMMAND{{mlr filter 'FNR == 2' data/small*}}HERE
|
|
|
|
<h3>Expression formatting for filter</h3>
|
|
|
|
<p/>Expressions may be arbitrarily complex:
|
|
|
|
POKI_RUN_COMMAND{{mlr --opprint filter '$a == "pan" || $b == "wye"' data/small}}HERE
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint filter '($x > 0.5 && $y > 0.5) || ($x < 0.5 && $y < 0.5)' then stats2 -a corr -f x,y data/medium}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint filter '($x > 0.5 && $y < 0.5) || ($x < 0.5 && $y > 0.5)' then stats2 -a corr -f x,y data/medium}}HERE
|
|
</td></tr></table>
|
|
|
|
Newlines within the expression are ignored, which can help increase legibility of complex expressions:
|
|
|
|
POKI_INCLUDE_ESCAPED(filter-multiline-example.txt)HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>grep</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr grep -h}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>group-by</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr group-by --help}}HERE
|
|
|
|
<p/>This is similar to <tt>sort</tt> but with less work. Namely, Miller’s
|
|
sort has three steps: read through the data and append linked lists of records,
|
|
one for each unique combination of the key-field values; after all records
|
|
are read, sort the key-field values; then print each record-list. The group-by
|
|
operation simply omits the middle sort. An example should make this more
|
|
clear.
|
|
|
|
<table><tr> <td>
|
|
POKI_RUN_COMMAND{{mlr --opprint group-by a data/small}}HERE
|
|
</td> <td>
|
|
POKI_RUN_COMMAND{{mlr --opprint sort -f a data/small}}HERE
|
|
</td> </tr></table>
|
|
|
|
<p/>In this example, since the sort is on field <tt>a</tt>, the first step is
|
|
to group together all records having the same value for field <tt>a</tt>; the
|
|
second step is to sort the distinct <tt>a</tt>-field values <tt>pan</tt>,
|
|
<tt>eks</tt>, and <tt>wye</tt> into <tt>eks</tt>, <tt>pan</tt>, and
|
|
<tt>wye</tt>; the third step is to print out the record-list for
|
|
<tt>a=eks</tt>, then the record-list for <tt>a=pan</tt>, then the record-list
|
|
for <tt>a=wye</tt>. The group-by operation omits the middle sort and just puts
|
|
like records together, for those times when a sort isn’t desired. In
|
|
particular, the ordering of group-by fields for group-by is the order in which
|
|
they were encountered in the data stream, which in some cases may be more interesting
|
|
to you.
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>group-like</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr group-like --help}}HERE
|
|
|
|
<p/> This groups together records having the same schema (i.e. same ordered list of field names)
|
|
which is useful for making sense of time-ordered output as described in
|
|
POKI_PUT_LINK_FOR_PAGE(record-heterogeneity.html)HERE — in particular, in
|
|
preparation for CSV or pretty-print output.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr cat data/het.dkvp}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint group-like data/het.dkvp}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>having-fields</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr having-fields --help}}HERE
|
|
|
|
<p/> Similar to <a href="#group-like"><tt>group-like</tt></a>, this retains records with specified schema.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr cat data/het.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr having-fields --at-least resource data/het.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr having-fields --which-are resource,ok,loadsec data/het.dkvp}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>head</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr head --help}}HERE
|
|
|
|
Note that <tt>head</tt> is distinct from <a href="#top"><tt>top</tt></a>
|
|
— <tt>head</tt> shows fields which appear first in the data stream;
|
|
<tt>top</tt> shows fields which are numerically largest (or smallest).
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint head -n 4 data/medium}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint head -n 1 -g b data/medium}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>histogram</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr histogram --help}}HERE
|
|
|
|
This is just a histogram; there’s not too much to say here. A note about
|
|
binning, by example: Suppose you use <tt>--lo 0.0 --hi 1.0 --nbins 10 -f
|
|
x</tt>. The input numbers less than 0 or greater than 1 aren’t counted
|
|
in any bin. Input numbers equal to 1 are counted in the last bin. That is, bin
|
|
0 has <tt>0.0 ≤ x < 0.1</tt>, bin 1 has <tt>0.1 ≤ x < 0.2</tt>,
|
|
etc., but bin 9 has <tt>0.9 ≤ x ≤ 1.0</tt>.
|
|
|
|
POKI_RUN_COMMAND{{mlr --opprint put '$x2=$x**2;$x3=$x2*$x' then histogram -f x,x2,x3 --lo 0 --hi 1 --nbins 10 data/medium}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>join</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr join --help}}HERE
|
|
|
|
Examples:
|
|
|
|
<p/>Join larger table with IDs with smaller ID-to-name lookup table, showing only paired records:
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsvlite --opprint cat data/join-left-example.csv}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsvlite --opprint cat data/join-right-example.csv}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsvlite --opprint join -u -j id -r idcode -f data/join-left-example.csv data/join-right-example.csv}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>Same, but with sorting the input first:
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsvlite --opprint sort -f idcode then join -j id -r idcode -f data/join-left-example.csv data/join-right-example.csv}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>Same, but showing only unpaired records:
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsvlite --opprint join --np --ul --ur -u -j id -r idcode -f data/join-left-example.csv data/join-right-example.csv}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>Use prefixing options to disambiguate between otherwise identical non-join field names:
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --csvlite --opprint cat data/self-join.csv data/self-join.csv}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --csvlite --opprint join -j a --lp left_ --rp right_ -f data/self-join.csv data/self-join.csv}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>Use zero join columns:
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --csvlite --opprint join -j "" --lp left_ --rp right_ -f data/self-join.csv data/self-join.csv}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>label</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr label --help}}HERE
|
|
|
|
See also <a href="#rename"><tt>rename</tt></a>.
|
|
|
|
<p/>Example: Files such as <tt>/etc/passwd</tt>, <tt>/etc/group</tt>, and so on
|
|
have implicit field names which are found in section-5 manpages. These field names may be made explicit as follows:
|
|
|
|
POKI_INCLUDE_ESCAPED(data/label-example.txt)HERE
|
|
|
|
<p/>Likewise, if you have CSV/CSV-lite input data which has somehow been bereft of its header line, you can re-add a header line using <tt>--implicit-csv-header</tt> and <tt>label</tt>:
|
|
|
|
POKI_RUN_COMMAND{{cat data/headerless.csv}}HERE
|
|
POKI_RUN_COMMAND{{mlr --csv --rs lf --implicit-csv-header cat data/headerless.csv}}HERE
|
|
POKI_RUN_COMMAND{{mlr --csv --rs lf --implicit-csv-header label name,age,status data/headerless.csv}}HERE
|
|
POKI_RUN_COMMAND{{mlr --icsv --rs lf --implicit-csv-header --opprint label name,age,status data/headerless.csv}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>merge-fields</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr merge-fields --help}}HERE
|
|
|
|
<p/>This is like <tt>mlr stats1</tt> but all accumulation is done across fields
|
|
within each given record: horizontal rather than vertical statistics, if you
|
|
will.
|
|
|
|
<p/>Examples:
|
|
|
|
POKI_RUN_COMMAND{{mlr --csvlite --opprint cat data/inout.csv}}HERE
|
|
POKI_RUN_COMMAND{{mlr --csvlite --opprint merge-fields -a min,max,sum -c _in,_out data/inout.csv}}HERE
|
|
POKI_RUN_COMMAND{{mlr --csvlite --opprint merge-fields -k -a sum -c _in,_out data/inout.csv}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>put</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr put --help}}HERE
|
|
|
|
<h3>Field names for put</h3>
|
|
|
|
<p/>Field names must be specified using a <tt>$</tt> in <a
|
|
href="#filter"><tt>filter</tt></a> and <tt>put</tt> expressions, even though
|
|
they don’t appear in the data stream. For integer-indexed data, this
|
|
looks like <tt>awk</tt>’s <tt>$1,$2,$3</tt>. Likewise, enclose string
|
|
literals in double quotes in <tt>put</tt> expressions even though they
|
|
don’t appear in file data. In particular, <tt>mlr put '$x="abc"'</tt>
|
|
creates the field <tt>x=abc</tt> and <tt>mlr filter '$x=="abc"'</tt> passes
|
|
through the field <tt>x</tt> if it has the value <tt>abc</tt>. If field names
|
|
have special characters such as <tt>.</tt> then you can use braces, e.g.
|
|
<tt>'${field.name}'</tt>.
|
|
|
|
<h3>Built-in variables for put</h3>
|
|
|
|
<p/>Miller supports the following five built-in variables for <a
|
|
href="#filter"><tt>filter</tt></a> and <tt>put</tt>, all <tt>awk</tt>-inspired:
|
|
<tt>NF</tt>, <tt>NR</tt>, <tt>FNR</tt>, <tt>FILENUM</tt>, and
|
|
<tt>FILENAME</tt>, as well as the mathematical constants <tt>PI</tt> and
|
|
<tt>E</tt>.
|
|
|
|
<h3>Expression formatting for put</h3>
|
|
|
|
<p/>Multiple expressions may be given, separated by semicolons, and each may refer to the ones before:
|
|
|
|
POKI_RUN_COMMAND{{ruby -e '10.times{|i|puts "i=#{i}"}' | mlr --opprint put '$j = $i + 1; $k = $i +$j'}}HERE
|
|
|
|
POKI_RUN_COMMAND{{mlr --opprint put '$nf=NF; $nr=NR; $fnr=FNR; $filenum=FILENUM; $filename=FILENAME' data/small data/small2}}HERE
|
|
|
|
Newlines within the expression are ignored, which can help increase legibility of complex expressions:
|
|
|
|
POKI_INCLUDE_ESCAPED(data/put-multiline-example.txt)HERE
|
|
|
|
<h3>Gating assignments by boolean expressions for put</h3>
|
|
|
|
<p/>Boolean expressions may be used as gates for subsequent semicolon-separated
|
|
expressions within the same <tt>put</tt>. This can be used to allow assignments
|
|
to be done only when appropriate — e.g. for math-function domain
|
|
restrictions, regex-matching, and so on:
|
|
|
|
POKI_RUN_COMMAND{{mlr cat data/put-gating-example-1.dkvp}}HERE
|
|
POKI_RUN_COMMAND{{mlr put 'gate $x > 0.0; $y = log10($x); $z = sqrt($y)' data/put-gating-example-1.dkvp}}HERE
|
|
POKI_RUN_COMMAND{{mlr cat data/put-gating-example-2.dkvp}}HERE
|
|
POKI_RUN_COMMAND{{mlr put 'gate $a =~ "([a-z]+)_([0-9]+)"; $b = "left_\1"; $c = "right_\2"' data/put-gating-example-2.dkvp}}HERE
|
|
|
|
<p/>This produces heteregenous output which Miller, of course, has no problems
|
|
with (see POKI_PUT_LINK_FOR_PAGE(record-heterogeneity.html)HERE). But
|
|
if homogeneous output is desired, the <tt>gate</tt> can be omitted. This
|
|
causes <tt>put</tt> to evaluate the boolean expression (along with any side
|
|
effects, namely, regex-captures <tt>\1</tt>, <tt>\2</tt>, etc.) but
|
|
doesn’t use it as a criterion for whether subsequent assignments should
|
|
be executed. Instead, subsequent assignments are done unconditionally:
|
|
|
|
POKI_RUN_COMMAND{{mlr put '$x > 0.0; $y = log10($x); $z = sqrt($y)' data/put-gating-example-1.dkvp}}HERE
|
|
POKI_RUN_COMMAND{{mlr put '$a =~ "([a-z]+)_([0-9]+)"; $b = "left_\1"; $c = "right_\2"' data/put-gating-example-2.dkvp}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>regularize</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr regularize --help}}HERE
|
|
|
|
<p/>This exists since hash-map software in various languages and tools
|
|
encountered in the wild does not always print similar rows with fields in the
|
|
same order: <tt>mlr regularize</tt> helps clean that up.
|
|
|
|
<p/>See also <a href="#reorder"><tt>reorder</tt></a>.
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>rename</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr rename --help}}HERE
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint cat data/small}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint rename i,INDEX,b,COLUMN2 data/small}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>As discussed in POKI_PUT_LINK_FOR_PAGE(performance.html)HERE, <tt>sed</tt>
|
|
is significantly faster than Miller at doing this. However, Miller is
|
|
format-aware, so it knows to do renames only within specified field keys and
|
|
not any others, nor in field values which may happen to contain the same
|
|
pattern. Example:
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{sed 's/y/COLUMN5/g' data/small}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr rename y,COLUMN5 data/small}}HERE
|
|
</td></tr></table>
|
|
|
|
See also <a href="#label"><tt>label</tt></a>.
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>reorder</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr reorder --help}}HERE
|
|
|
|
This pivots specified field names to the start or end of the record — for
|
|
example when you have highly multi-column data and you want to bring a field or
|
|
two to the front of line where you can give a quick visual scan.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint cat data/small}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint reorder -f i,b data/small}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint reorder -e -f i,b data/small}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>reshape</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr reshape --help}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>sample</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr sample --help}}HERE
|
|
|
|
<p/>This is reservoir-sampling: select <i>k</i> items from <i>n</i> with
|
|
uniform probability and no repeats in the sample. (If <i>n</i> is less than
|
|
<i>k</i>, then of course only <i>n</i> samples are produced.) With <tt>-g
|
|
{field names}</tt>, produce a <i>k</i>-sample for each distinct value of the
|
|
specified field names.
|
|
|
|
POKI_INCLUDE_ESCAPED(data/sample-example.txt)HERE
|
|
|
|
<p/>Note that no output is produced until all inputs are in. Another way to do
|
|
sampling, which works in the streaming case, is <tt>mlr filter 'urand() &
|
|
0.001'</tt> where you tune the 0.001 to meet your needs.
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>sec2gmt</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr sec2gmt -h}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>sort</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr sort --help}}HERE
|
|
|
|
<p/>Example:
|
|
POKI_RUN_COMMAND{{mlr --opprint sort -f a -nr x data/small}}HERE
|
|
|
|
<p/>Here’s an example filtering log data: suppose multiple threads (labeled here by color) are all logging progress counts to a single log file. The log file is (by nature) chronological, so the progress of various threads is interleaved:
|
|
|
|
POKI_RUN_COMMAND{{head -n 10 data/multicountdown.dat}}HERE
|
|
|
|
<p/> We can group these by thread by sorting on the thread ID (here,
|
|
<tt>color</tt>). Since Miller’s sort is stable, this means that
|
|
timestamps within each thread’s log data are still chronological:
|
|
|
|
POKI_RUN_COMMAND{{head -n 20 data/multicountdown.dat | mlr --opprint sort -f color}}HERE
|
|
|
|
<p/>Any records not having all specified sort keys will appear at the end of the output, in the order they
|
|
were encountered, regardless of the specified sort order:
|
|
|
|
POKI_RUN_COMMAND{{mlr sort -n x data/sort-missing.dkvp}}HERE
|
|
POKI_RUN_COMMAND{{mlr sort -nr x data/sort-missing.dkvp}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>stats1</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr stats1 --help}}HERE
|
|
|
|
These are simple univariate statistics on one or more number-valued fields
|
|
(<tt>count</tt> and <tt>mode</tt> apply to non-numeric fields as well),
|
|
optionally categorized by one or more other fields.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --oxtab stats1 -a count,sum,min,p10,p50,mean,p90,max -f x,y data/medium}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint stats1 -a mean -f x,y -g b then sort -f b data/medium}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint stats1 -a p50,p99 -f u,v -g color then put '$ur=$u_p99/$u_p50;$vr=$v_p99/$v_p50' data/colored-shapes.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint count-distinct -f shape then sort -nr count data/colored-shapes.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint stats1 -a mode -f color -g shape data/colored-shapes.dkvp}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>stats2</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr stats2 --help}}HERE
|
|
|
|
These are simple bivariate statistics on one or more pairs of number-valued
|
|
fields, optionally categorized by one or more fields.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --oxtab put '$x2=$x*$x; $xy=$x*$y; $y2=$y**2' then stats2 -a cov,corr -f x,y,y,y,x2,xy,x2,y2 data/medium}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint put '$x2=$x*$x; $xy=$x*$y; $y2=$y**2' then stats2 -a linreg-ols,r2 -f x,y,y,y,xy,y2 -g a data/medium}}HERE
|
|
</td></tr></table>
|
|
|
|
<p/>Here’s an example simple line-fit. The <tt>x</tt> and <tt>y</tt>
|
|
fields of the <tt>data/medium</tt> dataset are just independent uniformly
|
|
distributed on the unit interval. Here we remove half the data and fit a line to it.
|
|
|
|
POKI_INCLUDE_ESCAPED(data/linreg-example.txt)HERE
|
|
|
|
<p/>I use <a href="https://github.com/johnkerl/pgr"><tt>pgr</tt></a> for
|
|
plotting; here’s a screenshot.
|
|
|
|
<center>
|
|
<img src="data/linreg-example.jpg"/>
|
|
</center>
|
|
|
|
<p/> (Thanks Drew Kunas for a good conversation about PCA!)
|
|
|
|
<p/> Here’s an example estimating time-to-completion for a set of jobs.
|
|
Input data comes from a log file, with number of work units left to do in the
|
|
<tt>count</tt> field and accumulated seconds in the <tt>upsec</tt> field,
|
|
labeled by the <tt>color</tt> field:
|
|
|
|
POKI_RUN_COMMAND{{head -n 10 data/multicountdown.dat}}HERE
|
|
|
|
We can do a linear regression on count remaining as a function of time: with <tt>c = m*u+b</tt> we want to find the
|
|
time when the count goes to zero, i.e. <tt>u=-b/m</tt>.
|
|
|
|
POKI_RUN_COMMAND{{mlr --oxtab stats2 -a linreg-pca -f upsec,count -g color then put '$donesec = -$upsec_count_pca_b/$upsec_count_pca_m' data/multicountdown.dat}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>step</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr step --help}}HERE
|
|
|
|
Most Miller commands are record-at-a-time, with the exception of <tt>stats1</tt>,
|
|
<tt>stats2</tt>, and <tt>histogram</tt> which compute aggregate output. The
|
|
<tt>step</tt> command is intermediate: it allows the option of adding fields
|
|
which are functions of fields from previous records. Rsum is short for <i>running sum</i>.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint step -a delta,rsum,counter -f x data/medium | head -15}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint step -a delta,rsum,counter -f x -g a data/medium | head -15}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint step -a ewma -f x -d 0.1,0.9 ../doc/data/medium | head -15}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint step -a ewma -f x -d 0.1,0.9 -o smooth,rough ../doc/data/medium | head -15}}HERE
|
|
</td></tr></table>
|
|
|
|
Example deriving uptime-delta from system uptime:
|
|
|
|
POKI_INCLUDE_ESCAPED(data/ping-delta-example.txt)HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>tac</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr tac --help}}HERE
|
|
|
|
<p/>Prints the records in the input stream in reverse order. Note: this
|
|
requires Miller to retain all input records in memory before any output records
|
|
are produced.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsv --opprint cat a.csv}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --icsv --opprint cat b.csv}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --icsv --opprint tac a.csv b.csv}}HERE
|
|
</td></tr></table>
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --icsv --opprint put '$filename=FILENAME' then tac a.csv b.csv}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>tail</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr tail --help}}HERE
|
|
|
|
<p/> Prints the last <i>n</i> records in the input stream, optionally by category.
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint tail -n 4 data/colored-shapes.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint tail -n 1 -g shape data/colored-shapes.dkvp}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>top</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr top --help}}HERE
|
|
|
|
Note that <tt>top</tt> is distinct from <a href="#head"><tt>head</tt></a>
|
|
— <tt>head</tt> shows fields which appear first in the data stream;
|
|
<tt>top</tt> shows fields which are numerically largest (or smallest).
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint top -n 4 -f x data/medium}}HERE
|
|
</td><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint top -n 2 -f x -g a then sort -f a data/medium}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h2>uniq</h2>
|
|
|
|
POKI_RUN_COMMAND{{mlr uniq --help}}HERE
|
|
|
|
<table><tr><td>
|
|
POKI_RUN_COMMAND{{wc -l data/colored-shapes.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr uniq -g color,shape data/colored-shapes.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint uniq -g color,shape -c then sort -f color,shape data/colored-shapes.dkvp}}HERE
|
|
</td></tr><tr><td>
|
|
POKI_RUN_COMMAND{{mlr --opprint uniq -n -g color,shape data/colored-shapes.dkvp}}HERE
|
|
</td></tr></table>
|
|
|
|
<!-- ================================================================ -->
|
|
<h1>then-chaining</h1>
|
|
|
|
<p/>
|
|
In accord with the
|
|
<a href="http://en.wikipedia.org/wiki/Unix_philosophy">Unix philosophy</a>, you can pipe data into or out of
|
|
Miller. For example:
|
|
|
|
POKI_CARDIFY(mlr cut --complement -f os_version *.dat | mlr sort -f hostname,uptime)HERE
|
|
|
|
<p/>
|
|
You can, if you like, instead simply chain commands together using the
|
|
<tt>then</tt> keyword:
|
|
|
|
POKI_CARDIFY(mlr cut --complement -f os_version then sort -f hostname,uptime *.dat)HERE
|
|
|
|
Here’s a performance comparison:
|
|
|
|
POKI_INCLUDE_ESCAPED(data/then-chaining-performance.txt)HERE
|
|
|
|
There are two reasons to use then-chaining: one is for performance, although I
|
|
don’t expect this to be a win in all cases. Using then-chaining avoids
|
|
redundant string-parsing and string-formatting at each pipeline step: instead
|
|
input records are parsed once, they are fed through each pipeline stage in
|
|
memory, and then output records are formatted once. On the other hand, Miller
|
|
is single-threaded, while modern systems are usually multi-processor, and when
|
|
streaming-data programs operate through pipes, each one can use a CPU. Rest
|
|
assured you get the same results either way.
|
|
|
|
<p/>The other reason to use then-chaining is for simplicity: you don’t
|
|
have re-type formatting flags (e.g. <tt>--csv --rs lf --fs tab</tt>) at every
|
|
pipeline stage.
|
|
|
|
<!-- ================================================================ -->
|
|
<h1>Functions for filter and put</h1>
|
|
|
|
POKI_RUN_COMMAND{{mlr --help-all-functions}}HERE
|
|
|
|
<!-- ================================================================ -->
|
|
<h1>Operator precedence</h1>
|
|
|
|
<p/>Operators are listed in order of decreasing precedence, highest first.
|
|
|
|
<p/>
|
|
<div class="pokipanel">
|
|
<pre>
|
|
Operators Associativity
|
|
--------- -------------
|
|
() left to right
|
|
** right to left
|
|
! ~ unary+ unary- & right to left
|
|
binary* / // % left to right
|
|
binary+ binary- . left to right
|
|
<< >> left to right
|
|
& left to right
|
|
^ left to right
|
|
| left to right
|
|
< <= > >= left to right
|
|
== != =~ !=~ left to right
|
|
&& left to right
|
|
^^ left to right
|
|
|| left to right
|
|
? : right to left
|
|
= N/A for Miller (there is no $a=$b=$c)
|
|
</pre>
|
|
</div>
|
|
<p/>
|
|
|
|
<!-- ================================================================ -->
|
|
<h1>Operator and function semantics</h1>
|
|
|
|
<ul>
|
|
|
|
<li/> Functions are in general pass-throughs straight to the system-standard C
|
|
library.
|
|
|
|
<li/> The <tt>min</tt> and <tt>max</tt> functions are different from other
|
|
multi-argument functions which return null if any of their inputs are null: for
|
|
<tt>min</tt> and <tt>max</tt>, by contrast, if one argument is null, the other
|
|
is returned.
|
|
|
|
<li/> Symmetrically with respect to the bitwise OR, XOR, and AND operators
|
|
<tt>|</tt>, <tt>^</tt>, <tt>&</tt>, Miller has logical operators
|
|
<tt>||</tt>, <tt>^^</tt>, <tt>&&</tt>: the logical XOR not existing in
|
|
C.
|
|
|
|
<li/> The exponentiation operator <tt>**</tt> is familiar from many languages.
|
|
|
|
<li/> The regex-match and regex-not-match operators <tt>=~</tt> and
|
|
<tt>!=~</tt> are similar to those in Ruby and Perl.
|
|
|
|
</ul>
|
|
|
|
<!-- ================================================================ -->
|
|
<h1>Arithmetic</h1>
|
|
|
|
<h2>Input scanning</h2>
|
|
|
|
<p/>Numbers in Miller are double-precision float or 64-bit signed integers.
|
|
Anything scannable as int, e.g <tt>123</tt> or <tt>0xabcd</tt>, is treated as
|
|
an integer; otherwise, input scannable as float (<tt>4.56</tt> or <tt>8e9</tt>)
|
|
is treated as float; everything else is a string.
|
|
|
|
<p/>If you want all numbers to be treated as floats, then you may use
|
|
<tt>float()</tt> in your filter/put expressions (e.g. replacing <tt>$c = $a *
|
|
$b</tt> with <tt>$c = float($a) * float($b)</tt>) — or, more simply, use
|
|
<tt>mlr filter -F</tt> and <tt>mlr put -F</tt> which forces all numeric input,
|
|
whether from expression literals or field values, to float. Likewise <tt>mlr
|
|
stats1 -F</tt> and <tt>mlr step -F</tt> force integerable accumulators (such as
|
|
<tt>count</tt>) to be done in floating-point.
|
|
|
|
<h2>Conversion by math routines</h2>
|
|
|
|
<p/>For most math functions, integers are cast to float on input, and produce
|
|
float output: e.g. <tt>exp(0) = 1.0</tt> rather than <tt>1</tt>. The
|
|
following, however, produce integer output if their inputs are integers:
|
|
<tt>+</tt> <tt>-</tt> <tt>*</tt> <tt>/</tt> <tt>//</tt> <tt>%</tt> <tt>abs</tt>
|
|
<tt>ceil</tt> <tt>floor</tt> <tt>max</tt> <tt>min</tt> <tt>round</tt>
|
|
<tt>roundm</tt> <tt>sgn</tt>. As well, <tt>stats1 -a min</tt>, <tt>stats1 -a
|
|
max</tt>, <tt>stats1 -a sum</tt>, <tt>step -a delta</tt>, and <tt>step -a
|
|
rsum</tt> produce integer output if their inputs are integers.
|
|
|
|
<h2>Conversion by arithmetic operators</h2>
|
|
|
|
<p/>The sum, difference, and product of integers is again integer, except for
|
|
when that would overflow a 64-bit integer at which point Miller converts the
|
|
result to float.
|
|
|
|
<p/>The short of it is that Miller does this transparently for you so you
|
|
needn’t think about it.
|
|
|
|
<p/>Implementation details of this, for the interested: integer adds and
|
|
subtracts overflow by at most one bit so it suffices to check sign-changes.
|
|
Thus, Miller allows you to add and subtract arbitrary 64-bit signed integers,
|
|
converting only to float precisely when the result is less than -2<sup>63</sup>
|
|
or greater than 2<sup>63</sup>-1. Multiplies, on the other hand, can overflow
|
|
by a word size and a sign-change technique does not suffice to detect overflow.
|
|
Instead Miller tests whether the floating-point product exceeds the
|
|
representable integer range. Now, 64-bit integers have 64-bit precision while
|
|
IEEE-doubles have only 52-bit mantissas — so, there are 53 bits including
|
|
implicit leading one. The following experiment explicitly demonstrates the
|
|
resolution at this range:
|
|
|
|
<div class=pokipanel>
|
|
<pre>
|
|
64-bit integer 64-bit integer Casted to double Back to 64-bit
|
|
in hex in decimal integer
|
|
0x7ffffffffffff9ff 9223372036854774271 9223372036854773760.000000 0x7ffffffffffff800
|
|
0x7ffffffffffffa00 9223372036854774272 9223372036854773760.000000 0x7ffffffffffff800
|
|
0x7ffffffffffffbff 9223372036854774783 9223372036854774784.000000 0x7ffffffffffffc00
|
|
0x7ffffffffffffc00 9223372036854774784 9223372036854774784.000000 0x7ffffffffffffc00
|
|
0x7ffffffffffffdff 9223372036854775295 9223372036854774784.000000 0x7ffffffffffffc00
|
|
0x7ffffffffffffe00 9223372036854775296 9223372036854775808.000000 0x8000000000000000
|
|
0x7ffffffffffffffe 9223372036854775806 9223372036854775808.000000 0x8000000000000000
|
|
0x7fffffffffffffff 9223372036854775807 9223372036854775808.000000 0x8000000000000000
|
|
</pre>
|
|
</div>
|
|
|
|
<p/>That is, one cannot check an integer product to see if it is precisely
|
|
greater than 2<sup>63</sup>-1 or less than -2<sup>63</sup> using either integer
|
|
arithmetic (it may have already overflowed) or using double-precision (due to
|
|
granularity). Instead Miller checks for overflow in 64-bit integer
|
|
multiplication by seeing whether the absolute value of the double-precision
|
|
product exceeds the largest representable IEEE double less than 2<sup>63</sup>,
|
|
which we see from the listing above is 9223372036854774784. (An alternative
|
|
would be to do all integer multiplies using handcrafted multi-word 128-bit
|
|
arithmetic. This approach is not taken.)
|
|
|
|
<h2>Pythonic division</h2>
|
|
|
|
<p/>Division and remainder are
|
|
<a href="http://python-history.blogspot.com/2010/08/why-pythons-integer-division-floors.html">
|
|
pythonic</a>:
|
|
<ul>
|
|
<li/> Quotient of integers is floating-point: <tt>7/2</tt> is <tt>3.5</tt>.
|
|
<li/> Integer division is done with <tt>//</tt>: <tt>7/2</tt> is <tt>3</tt>.
|
|
This rounds toward the negative.
|
|
<li/> Remainders are non-negative.
|
|
</ul>
|
|
|
|
<!-- ================================================================ -->
|
|
<h1>Regular expressions</h1>
|
|
|
|
<p/>Miller lets you use regular expressions (of type POSIX.2) in the following contexts:
|
|
|
|
<ul>
|
|
|
|
<li/> In <tt>mlr filter</tt> with <tt>=~</tt> or <tt>!=~</tt>, e.g. <tt>mlr
|
|
filter '$url =~ "http.*com"'</tt>
|
|
|
|
<li/> In <tt>mlr put</tt> with <tt>sub</tt> or <tt>gsub</tt>, e.g. <tt>mlr put
|
|
'$url = sub($url, "http.*com", "")'</tt>
|
|
|
|
<li/> In <tt>mlr having-fields</tt>, e.g. <tt>mlr having-fields
|
|
--any-matching '^sda[0-9]'</tt>
|
|
|
|
<li/> In <tt>mlr cut</tt>, e.g. <tt>mlr cut -r -f '^status$,^sda[0-9]'</tt>
|
|
|
|
<li/> In <tt>mlr rename</tt>, e.g. <tt>mlr rename -r '^(sda[0-9]).*$,dev/\1'</tt>
|
|
|
|
<li/> In <tt>mlr grep</tt>, e.g. <tt>mlr --csv grep 00188555487 myfiles*.csv</tt>
|
|
|
|
</ul>
|
|
|
|
<p/>Points demonstrated by the above examples:
|
|
|
|
<ul>
|
|
|
|
<li/> There are no implicit start-of-string or end-of-string anchors; please
|
|
use <tt>^</tt> and/or <tt>$</tt> explicitly.
|
|
|
|
<li/> Miller regexes are wrapped with double quotes rather than slashes.
|
|
|
|
<li/> The <tt>i</tt> after the ending double quote indicates a case-insensitive
|
|
regex.
|
|
|
|
<li/> Capture groups are wrapped with <tt>(...)</tt> rather than
|
|
<tt>\(...\)</tt>; use <tt>\(</tt> and <tt>\)</tt> to match against parentheses.
|
|
|
|
</ul>
|
|
|
|
<p/>For <tt>filter</tt> and <tt>put</tt>, if the regular expression is a string
|
|
literal (the normal case), it is precompiled at process start and reused
|
|
thereafter, which is efficient. If the regular expression is a more complex
|
|
expression, including string concatenation using <tt>.</tt>, or a column name
|
|
(in which case you can take regular expressions from input data!), then regexes
|
|
are compiled on each record which works but is less efficient. As well, in this
|
|
case there is no way to specify case-insensitive matching.
|
|
|
|
<p/>Example:
|
|
|
|
POKI_RUN_COMMAND{{cat data/regex-in-data.dat}}HERE
|
|
POKI_RUN_COMMAND{{mlr filter '$name =~ $regex' data/regex-in-data.dat}}HERE
|
|
|
|
<h2>Regex captures</h2>
|
|
|
|
<p/>Regex captures of the form <tt>\1</tt>, <tt>\2</tt>, etc. are supported as follows:
|
|
<ul>
|
|
|
|
<li/> Captures have in-function context for <tt>sub</tt> and <tt>gsub</tt>.
|
|
For example, the first <tt>\1,\2</tt> pair belong to the first <tt>sub</tt> and
|
|
the second <tt>\1,\2</tt> pair belong to the second <tt>sub</tt>:
|
|
|
|
<p/>
|
|
<div class=pokipanel>
|
|
<pre>
|
|
mlr put '$b = sub($a, "(..)_(...)", "\2-\1"); $c = sub($a, "(..)_(.)(..)", ":\1:\2:\3")'
|
|
</pre>
|
|
</div>
|
|
|
|
<li/> Captures endure for the entirety of a <tt>put</tt> for the <tt>=~</tt>
|
|
and <tt>!=~</tt> operators. For example, here the <tt>\1,\2</tt> are set by the
|
|
<tt>=~</tt> operator and are used by both subsequent assignment statements:
|
|
|
|
<p/>
|
|
<div class=pokipanel>
|
|
<pre>
|
|
mlr put '$a =~ "(..)_(....); $b = "left_\1"; $c = "right_\2"'
|
|
</pre>
|
|
</div>
|
|
|
|
<li/>The captures are not retained across multiple puts. For example, here the
|
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<tt>\1,\2</tt> won’t be expanded from the regex capture:
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<p/>
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<div class=pokipanel>
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<pre>
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mlr put '$a =~ "(..)_(....)' then {... something else ...} then put '$b = "left_\1"; $c = "right_\2"'
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</pre>
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</div>
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<li/> Captures are ignored in <tt>filter</tt> for the <tt>=~</tt> and
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<tt>!=~</tt> operators. For example, there is no mechanism provided to refer to
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the first <tt>(..)</tt> as <tt>\1</tt> or to the second <tt>(....)</tt> as
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<tt>\2</tt> in the following filter statement:
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|
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<p/>
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|
<div class=pokipanel>
|
|
<pre>
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|
mlr filter '$a =~ "(..)_(....)'
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|
</pre>
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|
</div>
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|
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<li/> Up to nine matches are supported: <tt>\1</tt> through <tt>\9</tt>, while
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<tt>\0</tt> is the entire match string; <tt>\15</tt> is treated as <tt>\1</tt>
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followed by an unrelated <tt>5</tt>.
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</ul>
|