#include #include #include #include #include "lib/mlrutil.h" #include "lib/mlr_globals.h" #include "containers/sllv.h" #include "containers/slls.h" #include "containers/string_array.h" #include "containers/lhmslv.h" #include "containers/lhmsv.h" #include "containers/mixutil.h" #include "mapping/mappers.h" #include "mapping/mlr_val.h" #include "cli/argparse.h" // ---------------------------------------------------------------- typedef void step_dprocess_func_t(void* pvstate, double fltv, lrec_t* prec); typedef void step_nprocess_func_t(void* pvstate, mv_t* pval, lrec_t* prec); typedef void step_sprocess_func_t(void* pvstate, char* strv, lrec_t* prec); typedef struct _step_t { void* pvstate; step_dprocess_func_t* pdprocess_func; step_nprocess_func_t* pnprocess_func; step_sprocess_func_t* psprocess_func; } step_t; typedef step_t* step_alloc_func_t(char* input_field_name, int allow_int_float); typedef struct _mapper_step_state_t { slls_t* pstepper_names; string_array_t* pvalue_field_names; // parameter string_array_t* pvalue_field_values; // scratch space used per-record slls_t* pgroup_by_field_names; // parameter lhmslv_t* groups; int allow_int_float; } mapper_step_state_t; // Multilevel hashmap structure: // { // ["s","t"] : { <--- group-by field names // ["x","y"] : { <--- value field names // "corr" : C stats2_corr_t object, // "cov" : C stats2_cov_t object // } // }, // ["u","v"] : { // ["x","y"] : { // "corr" : C stats2_corr_t object, // "cov" : C stats2_cov_t object // } // }, // ["u","w"] : { // ["x","y"] : { // "corr" : C stats2_corr_t object, // "cov" : C stats2_cov_t object // } // }, // } // ---------------------------------------------------------------- static void mapper_step_usage(FILE* o, char* argv0, char* verb); static mapper_t* mapper_step_parse_cli(int* pargi, int argc, char** argv); static mapper_t* mapper_step_alloc(slls_t* pstepper_names, string_array_t* pvalue_field_names, slls_t* pgroup_by_field_names, int allow_int_float); static void mapper_step_free(void* pvstate); static sllv_t* mapper_step_process(lrec_t* pinrec, context_t* pctx, void* pvstate); static step_t* step_delta_alloc(char* input_field_name, int allow_int_float); static step_t* step_from_first_alloc(char* input_field_name, int allow_int_float); static step_t* step_ratio_alloc(char* input_field_name, int allow_int_float); static step_t* step_rsum_alloc(char* input_field_name, int allow_int_float); static step_t* step_counter_alloc(char* input_field_name, int allow_int_float); static step_t* make_step(char* step_name, char* input_field_name, int allow_int_float); typedef struct _step_lookup_t { char* name; step_alloc_func_t* palloc_func; char* desc; } step_lookup_t; static step_lookup_t step_lookup_table[] = { {"delta", step_delta_alloc, "Compute differences in field(s) between successive records"}, {"from-first", step_from_first_alloc, "Compute differences in field(s) from first record"}, {"ratio", step_ratio_alloc, "Compute ratios in field(s) between successive records"}, {"rsum", step_rsum_alloc, "Compute running sums of field(s) between successive records"}, {"counter", step_counter_alloc, "Count instances of field(s) between successive records"}, }; static int step_lookup_table_length = sizeof(step_lookup_table) / sizeof(step_lookup_table[0]); // ---------------------------------------------------------------- mapper_setup_t mapper_step_setup = { .verb = "step", .pusage_func = mapper_step_usage, .pparse_func = mapper_step_parse_cli }; // ---------------------------------------------------------------- static void mapper_step_usage(FILE* o, char* argv0, char* verb) { fprintf(o, "Usage: %s %s [options]\n", argv0, verb); fprintf(o, "Computes values dependent on the previous record, optionally grouped\n"); fprintf(o, "by category.\n"); fprintf(o, "-a {delta,rsum,...} Names of steppers: comma-separated, one or more of:\n"); for (int i = 0; i < step_lookup_table_length; i++) { fprintf(o, " %-8s %s\n", step_lookup_table[i].name, step_lookup_table[i].desc); } fprintf(o, "-f {a,b,c} Value-field names on which to compute statistics\n"); fprintf(o, "-g {d,e,f} Optional group-by-field names\n"); fprintf(o, "-F Computes integerable things (e.g. counter) in floating point.\n"); } static mapper_t* mapper_step_parse_cli(int* pargi, int argc, char** argv) { slls_t* pstepper_names = NULL; string_array_t* pvalue_field_names = NULL; slls_t* pgroup_by_field_names = slls_alloc(); int allow_int_float = TRUE; char* verb = argv[(*pargi)++]; ap_state_t* pstate = ap_alloc(); ap_define_string_list_flag(pstate, "-a", &pstepper_names); ap_define_string_array_flag(pstate, "-f", &pvalue_field_names); ap_define_string_list_flag(pstate, "-g", &pgroup_by_field_names); ap_define_false_flag(pstate, "-F", &allow_int_float); if (!ap_parse(pstate, verb, pargi, argc, argv)) { mapper_step_usage(stderr, argv[0], verb); return NULL; } if (pstepper_names == NULL || pvalue_field_names == NULL) { mapper_step_usage(stderr, argv[0], verb); return NULL; } return mapper_step_alloc(pstepper_names, pvalue_field_names, pgroup_by_field_names, allow_int_float); } // ---------------------------------------------------------------- static mapper_t* mapper_step_alloc(slls_t* pstepper_names, string_array_t* pvalue_field_names, slls_t* pgroup_by_field_names, int allow_int_float) { mapper_t* pmapper = mlr_malloc_or_die(sizeof(mapper_t)); mapper_step_state_t* pstate = mlr_malloc_or_die(sizeof(mapper_step_state_t)); pstate->pstepper_names = pstepper_names; pstate->pvalue_field_names = pvalue_field_names; pstate->pvalue_field_values = string_array_alloc(pvalue_field_names->length); pstate->pgroup_by_field_names = pgroup_by_field_names; pstate->groups = lhmslv_alloc(); pstate->allow_int_float = allow_int_float; pmapper->pvstate = pstate; pmapper->pprocess_func = mapper_step_process; pmapper->pfree_func = mapper_step_free; return pmapper; } static void mapper_step_free(void* pvstate) { mapper_step_state_t* pstate = pvstate; slls_free(pstate->pstepper_names); string_array_free(pstate->pvalue_field_names); string_array_free(pstate->pvalue_field_values); slls_free(pstate->pgroup_by_field_names); // xxx free the level-2's 1st lhmslv_free(pstate->groups); } // ---------------------------------------------------------------- static sllv_t* mapper_step_process(lrec_t* pinrec, context_t* pctx, void* pvstate) { mapper_step_state_t* pstate = pvstate; if (pinrec == NULL) return sllv_single(NULL); // ["s", "t"] mlr_reference_values_from_record(pinrec, pstate->pvalue_field_names, pstate->pvalue_field_values); slls_t* pgroup_by_field_values = mlr_selected_values_from_record(pinrec, pstate->pgroup_by_field_names); if (pgroup_by_field_values == NULL) { slls_free(pgroup_by_field_values); return sllv_single(pinrec); } lhmsv_t* group_to_acc_field = lhmslv_get(pstate->groups, pgroup_by_field_values); if (group_to_acc_field == NULL) { group_to_acc_field = lhmsv_alloc(); lhmslv_put(pstate->groups, slls_copy(pgroup_by_field_values), group_to_acc_field); } // for x=1 and y=2 int n = pstate->pvalue_field_names->length; for (int i = 0; i < n; i++) { char* value_field_name = pstate->pvalue_field_names->strings[i]; char* value_field_sval = pstate->pvalue_field_values->strings[i]; if (value_field_sval == NULL) continue; int have_dval = FALSE; int have_nval = FALSE; double value_field_dval = -999.0; mv_t value_field_nval = mv_from_null(); lhmsv_t* acc_field_to_acc_state = lhmsv_get(group_to_acc_field, value_field_name); if (acc_field_to_acc_state == NULL) { acc_field_to_acc_state = lhmsv_alloc(); lhmsv_put(group_to_acc_field, value_field_name, acc_field_to_acc_state); } // for "delta", "rsum" sllse_t* pc = pstate->pstepper_names->phead; for ( ; pc != NULL; pc = pc->pnext) { char* step_name = pc->value; step_t* pstep = lhmsv_get(acc_field_to_acc_state, step_name); if (pstep == NULL) { pstep = make_step(step_name, value_field_name, pstate->allow_int_float); if (pstep == NULL) { fprintf(stderr, "mlr step: stepper \"%s\" not found.\n", step_name); exit(1); } lhmsv_put(acc_field_to_acc_state, step_name, pstep); } if (pstep->pdprocess_func != NULL) { if (!have_dval) { value_field_dval = mlr_double_from_string_or_die(value_field_sval); have_dval = TRUE; } pstep->pdprocess_func(pstep->pvstate, value_field_dval, pinrec); } if (pstep->pnprocess_func != NULL) { if (!have_nval) { value_field_nval = pstate->allow_int_float ? mv_scan_number_or_die(value_field_sval) : mv_from_float(mlr_double_from_string_or_die(value_field_sval)); have_nval = TRUE; } pstep->pnprocess_func(pstep->pvstate, &value_field_nval, pinrec); } if (pstep->psprocess_func != NULL) { pstep->psprocess_func(pstep->pvstate, value_field_sval, pinrec); } } } return sllv_single(pinrec); } static step_t* make_step(char* step_name, char* input_field_name, int allow_int_float) { for (int i = 0; i < step_lookup_table_length; i++) if (streq(step_name, step_lookup_table[i].name)) return step_lookup_table[i].palloc_func(input_field_name, allow_int_float); return NULL; } // ---------------------------------------------------------------- typedef struct _step_delta_state_t { mv_t prev; char* output_field_name; int allow_int_float; } step_delta_state_t; static void step_delta_nprocess(void* pvstate, mv_t* pnumv, lrec_t* prec) { step_delta_state_t* pstate = pvstate; mv_t delta; if (mv_is_null(&pstate->prev)) { delta = pstate->allow_int_float ? mv_from_int(0LL) : mv_from_float(0.0); } else { delta = n_nn_minus_func(pnumv, &pstate->prev); } lrec_put(prec, pstate->output_field_name, mv_format_val(&delta), LREC_FREE_ENTRY_VALUE); pstate->prev = *pnumv; } static step_t* step_delta_alloc(char* input_field_name, int allow_int_float) { step_t* pstep = mlr_malloc_or_die(sizeof(step_t)); step_delta_state_t* pstate = mlr_malloc_or_die(sizeof(step_delta_state_t)); pstate->prev = mv_from_null(); pstate->allow_int_float = allow_int_float; pstate->output_field_name = mlr_paste_2_strings(input_field_name, "_delta"); pstep->pvstate = (void*)pstate; pstep->pdprocess_func = NULL; pstep->pnprocess_func = step_delta_nprocess; pstep->psprocess_func = NULL; return pstep; } // xxx step_delta_free et al. // ---------------------------------------------------------------- typedef struct _step_from_first_state_t { mv_t first; char* output_field_name; int allow_int_float; } step_from_first_state_t; static void step_from_first_nprocess(void* pvstate, mv_t* pnumv, lrec_t* prec) { step_from_first_state_t* pstate = pvstate; mv_t from_first; if (mv_is_null(&pstate->first)) { from_first = pstate->allow_int_float ? mv_from_int(0LL) : mv_from_float(0.0); pstate->first = *pnumv; } else { from_first = n_nn_minus_func(pnumv, &pstate->first); } lrec_put(prec, pstate->output_field_name, mv_format_val(&from_first), LREC_FREE_ENTRY_VALUE); } static step_t* step_from_first_alloc(char* input_field_name, int allow_int_float) { step_t* pstep = mlr_malloc_or_die(sizeof(step_t)); step_from_first_state_t* pstate = mlr_malloc_or_die(sizeof(step_from_first_state_t)); pstate->first = mv_from_null(); pstate->allow_int_float = allow_int_float; pstate->output_field_name = mlr_paste_2_strings(input_field_name, "_from_first"); pstep->pvstate = (void*)pstate; pstep->pdprocess_func = NULL; pstep->pnprocess_func = step_from_first_nprocess; pstep->psprocess_func = NULL; return pstep; } // ---------------------------------------------------------------- typedef struct _step_ratio_state_t { double prev; int have_prev; char* output_field_name; } step_ratio_state_t; static void step_ratio_dprocess(void* pvstate, double fltv, lrec_t* prec) { step_ratio_state_t* pstate = pvstate; double ratio = 1.0; if (pstate->have_prev) { ratio = fltv / pstate->prev; } else { pstate->have_prev = TRUE; } lrec_put(prec, pstate->output_field_name, mlr_alloc_string_from_double(ratio, MLR_GLOBALS.ofmt), LREC_FREE_ENTRY_VALUE); pstate->prev = fltv; } static step_t* step_ratio_alloc(char* input_field_name, int allow_int_float) { step_t* pstep = mlr_malloc_or_die(sizeof(step_t)); step_ratio_state_t* pstate = mlr_malloc_or_die(sizeof(step_ratio_state_t)); pstate->prev = -999.0; pstate->have_prev = FALSE; pstate->output_field_name = mlr_paste_2_strings(input_field_name, "_ratio"); pstep->pvstate = (void*)pstate; pstep->pdprocess_func = step_ratio_dprocess; pstep->pnprocess_func = NULL; pstep->psprocess_func = NULL; return pstep; } // ---------------------------------------------------------------- typedef struct _step_rsum_state_t { mv_t rsum; char* output_field_name; int allow_int_float; } step_rsum_state_t; static void step_rsum_nprocess(void* pvstate, mv_t* pnumv, lrec_t* prec) { step_rsum_state_t* pstate = pvstate; pstate->rsum = n_nn_plus_func(&pstate->rsum, pnumv); lrec_put(prec, pstate->output_field_name, mv_format_val(&pstate->rsum), LREC_FREE_ENTRY_VALUE); } static step_t* step_rsum_alloc(char* input_field_name, int allow_int_float) { step_t* pstep = mlr_malloc_or_die(sizeof(step_t)); step_rsum_state_t* pstate = mlr_malloc_or_die(sizeof(step_rsum_state_t)); pstate->allow_int_float = allow_int_float; pstate->rsum = pstate->allow_int_float ? mv_from_int(0LL) : mv_from_float(0.0); pstate->output_field_name = mlr_paste_2_strings(input_field_name, "_rsum"); pstep->pvstate = (void*)pstate; pstep->pdprocess_func = NULL; pstep->pnprocess_func = step_rsum_nprocess;; pstep->psprocess_func = NULL; return pstep; } // ---------------------------------------------------------------- typedef struct _step_counter_state_t { mv_t counter; mv_t one; char* output_field_name; } step_counter_state_t; static void step_counter_sprocess(void* pvstate, char* strv, lrec_t* prec) { step_counter_state_t* pstate = pvstate; pstate->counter = n_nn_plus_func(&pstate->counter, &pstate->one); lrec_put(prec, pstate->output_field_name, mv_format_val(&pstate->counter), LREC_FREE_ENTRY_VALUE); } static step_t* step_counter_alloc(char* input_field_name, int allow_int_float) { step_t* pstep = mlr_malloc_or_die(sizeof(step_t)); step_counter_state_t* pstate = mlr_malloc_or_die(sizeof(step_counter_state_t)); pstate->counter = allow_int_float ? mv_from_int(0LL) : mv_from_float(0.0); pstate->one = allow_int_float ? mv_from_int(1LL) : mv_from_float(1.0); pstate->output_field_name = mlr_paste_2_strings(input_field_name, "_counter"); pstep->pvstate = (void*)pstate; pstep->pdprocess_func = NULL; pstep->psprocess_func = step_counter_sprocess; pstep->pnprocess_func = NULL; return pstep; }